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|Type:||Artigo de periódico|
|Title:||TISs-ST: a web server to evaluate polymorphic translation initiation sites and their reflections on the secretory targets|
|Abstract:||Background: The nucleotide sequence flanking the translation initiation codon ( start codon context) affects the translational efficiency of eukaryotic mRNAs, and may indicate the presence of an alternative translation initiation site (TIS) to produce proteins with different properties. Multi-targeting may reflect the translational variability of these other protein forms. In this paper we present a web server that performs computations to investigate the usage of alternative translation initiation sites for the synthesis of new protein variants that might have different functions. Results: An efficient web-based tool entitled TISs-ST ( Translation Initiation Sites and Secretory Targets) evaluates putative translation initiation sites and indicates the prediction of a signal peptide of the protein encoded from this site. The TISs-ST web server is freely available to both academic and commercial users and can be accessed at http://ipe.cbmeg.unicamp.br/pub/TISs-ST. Conclusion: The program can be used to evaluate alternative translation initiation site consensus with user-specified sequences, based on their composition or on many position weight matrix models. TISs-ST provides analytical and visualization tools for evaluating the periodic frequency, the consensus pattern and the total information content of a sequence data set. A search option allows for the identification of signal peptides from predicted proteins using the PrediSi software.|
|Editor:||Biomed Central Ltd|
|Citation:||Bmc Bioinformatics. Biomed Central Ltd, v. 8, 2007.|
|Appears in Collections:||Unicamp - Artigos e Outros Documentos|
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