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Type: Artigo de periódico
Title: A web-based bioinformatics interface applied to the GENOSOJA project: databases and pipelines
Author: Nascimento, Leandro Costa do
Costa, Gustavo Gilson Lacerda
Binneck, Eliseu
Pereira, Gonçalo Amarante Guimarães
Carazzolle, Marcelo Falsarella
Abstract: The Genosoja consortium is an initiative to integrate different omics research approaches carried out in Brazil. Basically, the aim of the project is to improve the plant by identifying genes involved in responses against stresses that affect domestic production, like drought stress and Asian Rust fungal disease. To do so, the project generated several types of sequence data using different methodologies, most of them sequenced by next generation sequencers. The initial stage of the project is highly dependent on bioinformatics analysis, providing suitable tools and integrated databases. In this work, we describe the main features of the Genosoja web database, including the pipelines to analyze some kinds of data (ESTs, SuperSAGE, microRNAs, subtractive cDNA libraries), as well as web interfaces to access information about soybean gene annotation and expression.
Subject: bioinformatics
gene expression
Editor: Sociedade Brasileira de Genética
Citation: Genetics and Molecular Biology. Sociedade Brasileira de Genética, v. 35, n. 1, p. 203-211, 2012.
Rights: aberto
Identifier DOI: 10.1590/S1415-47572012000200002
Date Issue: 1-Jan-2012
Appears in Collections:Unicamp - Artigos e Outros Documentos

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