Please use this identifier to cite or link to this item: http://repositorio.unicamp.br/jspui/handle/REPOSIP/34277
Type: Artigo de periódico
Title: Trimming and clustering sugarcane ESTs
Author: Telles, Guilherme P.
Silva, Felipe R. da
Abstract: The original clustering procedure adopted in the Sugarcane Expressed Sequence Tag project (SUCEST) had many problems, for instance too many clusters, the presence of ribosomal sequences, etc. We therefore redesigned the clustering procedure entirely, including a much more careful initial trimming of the reads. In this paper the new trimming and clustering strategies are described in detail and we give the new official figures for the project, 237,954 expressed sequence tags and 43,141 clusters.
O método de clustering adotado no Projeto SUCEST (Sugarcane EST Project) tinha vários problemas (muitos clusters, presença de seqüências de ribossomo etc.) Nós assumimos a tarefa de reprojetar todo o processo de clustering, propondo uma limpeza inicial mais cuidadosa das seqüências. Neste artigo as estratégias de limpeza das seqüências e de clustering são descritas em detalhe, incluindo os números oficiais do projeto (237,954 ESTs e 43,141 clusters).
Editor: Sociedade Brasileira de Genética
Rights: aberto
Identifier DOI: 10.1590/S1415-47572001000100004
Address: http://dx.doi.org/10.1590/S1415-47572001000100004
http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572001000100004
Date Issue: 1-Dec-2001
Appears in Collections:Artigos e Materiais de Revistas Científicas - Unicamp

Files in This Item:
File Description SizeFormat 
S1415-47572001000100004.pdf952.33 kBAdobe PDFView/Open


Items in DSpace are protected by copyright, with all rights reserved, unless otherwise indicated.