Please use this identifier to cite or link to this item: http://repositorio.unicamp.br/jspui/handle/REPOSIP/104739
Type: Artigo de evento
Title: New Est Trimming Procedure Applied To Sucest Sequences
Author: Baudet C.
Dias Z.
Abstract: In order to improve EST trimming, we proposed a new method consisting of a new set of procedures to detect regions that do not belong to the sequenced organism or have low quality or low complexity. Most trimming procedures process ESTs in a pipeline where the output of an step is adopted as the input for the following one. In our method, all artifact detection steps process the raw EST and their results are combined in the last step, which outputs the trimmed sequence. This strategy reduces the occurrence of false negatives and, additionally, has the advantage of producing better artifact composition characterization for the analyzed sequences. We evaluated our method using SUCEST [1] ESTs. Based on the results, we concluded that our method suits projects that want to produce more reliable clusters. © Springer-Verlag Berlin Heidelberg 2007.
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Rights: fechado
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Address: http://www.scopus.com/inward/record.url?eid=2-s2.0-38049064016&partnerID=40&md5=8e6477796f618f9e19350e74dd8fabd8
Date Issue: 2007
Appears in Collections:Unicamp - Artigos e Outros Documentos

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